Se precisar do visto antes de 31 de dezembro de 2018, pode candidatar-se a
Visa Waiver Program (eNTRI) for Indian Nationals.
This program is extended until 31st Dicember 2018.
O que é o eNTRI?
What is eNTRI?
Electronic Travel Registration & Information (eNTRI) is an online registration facility provided by the Government of Malaysia to facilitate the entrance of Indian Nationals into Malaysia under the Visa Waiver Programme. An eNTRI Note will be issued as proof of the registration and it is required to be presented upon arrival in Malaysia.
Você tem razão, o eNTRI parece ter essa restrição
Applicants residing inside India must have a direct flight from India to Malaysia and direct return flight ticket from Malaysia to India or via Singapore, Thailand or Brunei by air OR land is permitted to enter Malaysia and exit Malaysia via the following Entry/Exit points:
Você pode simplesmente obter um eVisa
What is eVISA?
eVISA is an online application platform that enables foreign nationals to apply for an electronic visa to enter Malaysia at the comfort of your convenience.
Inscreva-se aqui em ambos os casos.