Gradualmente, entre o 1920 e os primeiros 1960s
Sua avaliação está correta - os mutantes existem há muito, muito tempo, mas houve uma sequência de eventos no século XIX que finalmente os levou à atenção do público. No século XIX, a consciência dos mutantes parece ter aumentado gradualmente, entre o 20 e os primeiros 20s.
O trecho a seguir é da seção wiki do site oficial da Marvel. (A ênfase ousada é minha.)
While records of Mutants on Earth appear as early as 5,000 years ago (with the emergence of Apocalypse in Egypt) the Mutant population did not grow to significant numbers until the early 20th century. Mutant births, however, began to increase throughout the 20th century (presumably due to environmental factors related to industrialization). In 1920, one of the most prominent mutants was born: Namor the Sub-Mariner, who is considered by many to be the first modern-day Mutant. The Second World War saw the emergence of Mutants as soldiers as several...including Toro, the Sub-Mariner, and Wolverine fought in Allied or Axis armies. The World War II era also saw the beginnings of programs which used mutants as genetic soldiers, such as the Weapon Plus program. Mutant births steeped upwards after the end of the war (following the atomic blasts in Hiroshima and Nagasaki).
As Mutant populations grew, human governments and populations reacted harshly to them, and the Mutants began to form widely divergent ideas about how best to live within the larger human society. Mutants broke off into two rough camps...
(Fonte: Marvel.com - Artigo "Mutantes")
Observe que as atividades de Namor eram bastante "públicas" - em pelo menos uma história de origem, ele destruiu navios e guerreou contra habitantes da superfície e geralmente atacou a civilização humana antes de se juntar à luta dos Aliados contra o Eixo na Segunda Guerra Mundial.
Não se pode confirmar, no entanto, até que ponto suas atividades teriam sido relatadas ao público em geral. A resposta provavelmente é "nem um pouco", dado o que encontramos no X-Men Wiki:
Very few people know about mutants before the latter half of the 20th Century...many, if not the vast majority of mutants apparently hid their powers. The general public did know about [supersoldiers] like Captain America. The American military knew of Wolverine, but they were unaware that he was something categorically different from other supersoldiers...Activities of some superheroes and supervillians may have been what notified the general public about the existence of mutants.
(Fonte: X-Men Wiki - Artigo "Mutante")